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22 items matching your search terms.
Nanopore Sequencing and Data Analysis for Base-Resolution Genome-Wide 5-Methylcytosine Profiling
Angeloni, A.; Ferguson, J.; Bogdanovic, O.
Methods in Molecular Biology 2458 :75-94, 2022 10.1007/978-1-0716-2140-0_5
Sequence determinants, function, and evolution of CpG islands
Angeloni, A.; Bogdanovic, O.
BIOCHEMICAL SOCIETY TRANSACTIONS 49 (3) :1109-1119, 2021 10.1042/BST20200695
Analysis of gene network bifurcation during optic cup morphogenesis in zebrafish
Buono, L.; Corbacho, J.; Naranjo, S.; Almuedo-Castillo, M.; Moreno-Marmol, T.; de la Cerda, B.; Sanbria-Reinoso, E.; Polvillo, R.; Diaz-Corrales, F. J.; Bogdanovic, O.; Bovolenta, P.; Martinez-Morales, J. R.
Nature Communications 12 (1) :3866, 2021 10.1038/s41467-021-24169-7
TAB-seq and ACE-seq Data Processing for Genome-Wide DNA hydroxymethylation Profiling
Skvortsova, K.; Bogdanovic, O.
Methods in Molecular Biology 2272 :163-178, 2021 10.1007/978-1-0716-1294-1_9
Generation and Molecular Characterization of Transient tet1/2/3 Zebrafish Knockouts
Ross, S. E.; Bogdanovic, O.
Methods in Molecular Biology 2272 :281-317, 2021 10.1007/978-1-0716-1294-1_17
Kruppel-like factor 1 is a core cardiomyogenic trigger in zebrafish
Ogawa, M.; Geng, F. S.; Humphreys, D. T.; Kristianto, E.; Sheng, D. Z.; Hui, S. P.; Zhang, Y.; Sugimoto, K.; Nakayama, M.; Zheng, D.; Hesselson, D.; Hodson, M. P.; Bogdanovic, O.; Kikuchi, K.
SCIENCE 372 (6538) :201-205, 2021 10.1126/science.abe2762
Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome
Edwards, R. J.; Field, M. A.; Ferguson, J. M.; Dudchenko, O.; Keilwagen, J.; Rosen, B. D.; Johnson, G. S.; Rice, E. S.; Hillier, D.; Hammond, J. M.; Towarnicki, S. G.; Omer, A.; Khan, R.; Skvortsova, K.; Bogdanovic, O.; Zammit, R. A.; Aiden, E. L.; Warren, W. C.; Ballard, J. W. O.
BMC Genomics 22 (1) :188, 2021 10.1186/s12864-021-07493-6
Developmental Accumulation of Gene Body and Transposon Non-CpG Methylation in the Zebrafish Brain
Ross, S. E.; Hesselson, D.; Bogdanovic, O.
Frontiers in Cell and Developmental Biology 9 :643603, 2021 10.3389/fcell.2021.643603
The emergence of the brain non-CpG methylation system in vertebrates
de Mendoza, A.; Poppe, D.; Buckberry, S.; Pflueger, J.; Albertin, C. B.; Daish, T.; Bertrand, S.; de la Calle-Mustienes, E.; Gomez-Skarmeta, J. L.; Nery, J. R.; Ecker, J. R.; Baer, B.; Ragsdale, C. W.; Grutzner, F.; Escriva, H.; Venkatesh, B.; Bogdanovic, O.; Lister, R.
Nature Ecology & Evolution 5 (3) :369-378, 2021 10.1038/s41559-020-01371-2
Developmental remodelling of non-CG methylation at satellite DNA repeats
Ross, S. E.; Angeloni, A.; Geng, F. S.; de Mendoza, A.; Bogdanovic, O.
NUCLEIC ACIDS RESEARCH 48 (22) :12675-12688, 2020 10.1093/nar/gkaa1135
A zebrafish functional genomics model to investigate the role of human A20 variants in vivo
Cultrone, D.; Zammit, N. W.; Self, E.; Postert, B.; Han, J. Z. R.; Bailey, J.; Warren, J.; Croucher, D. R.; Kikuchi, K.; Bogdanovic, O.; Chtanova, T.; Hesselson, D.; Grey, S. T.
Scientific Reports 10 (1) :19085, 2020 10.1038/s41598-020-75917-6.
Evolution of DNA methylome diversity in eukaryotes
de Mendoza, A.; Lister, R.; Bogdanovic, O.
JOURNAL OF MOLECULAR BIOLOGY 432 (6) :1687-1705, 2020 10.1016/j.jmb.2019.11.003
Enhancer DNA methylation: implications for gene regulation
Angeloni, A.; Bogdanovic, O.
Essays in Biochemistry 63 (6) :707-715, 2019 10.1042/EBC20190030
Convergent evolution of a vertebrate-like methylome in a marine sponge
de Mendoza, A.; Hatleberg, W. L.; Pang, K.; Leininger, S.; Bogdanovic, O.; Pflueger, J.; Buckberry, S.; Technau, U.; Hejnol, A.; Adamska, M.; Degnan, B. M.; Degnan, S. M.; Lister, R.
Nature Ecology & Evolution 3 (10) :1464-1473, 2019 10.1038/s41559-019-0983-2
Retention of paternal DNA methylome in the developing zebrafish germline
Skvortsova, K.; Tarbashevich, K.; Stehling, M.; Lister, R.; Irimia, M.; Raz, E.; Bogdanovic, O.
Nature Communications 10 (1) :3054, 2019 10.1038/s41467-019-10895-6
TET enzymes, DNA demethylation and pluripotency
Ross, S. E.; Bogdanovic, O.
BIOCHEMICAL SOCIETY TRANSACTIONS 47 (3) :875-885, 2019 10.1042/BST20180606