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123 items matching your search terms.
Target-Specific Profiling of RNA m(5)C Methylation Level Using Amplicon Sequencing
Sibbritt, T.; Schumann, U.; Shafik, A.; Guarnacci, M.; Clark, S. J.; Preiss, T.
Methods in Molecular Biology 2404 :375-392, 2022 10.1007/978-1-0716-1851-6_21
Identification of DNA methylation biomarkers with potential to predict response to neoadjuvant chemotherapy in triple-negative breast cancer
Meyer, B.; Clifton, S.; Locke, W.; Luu, P. L.; Du, Q.; Lam, D.; Armstrong, N. J.; Kumar, B.; Deng, N.; Harvey, K.; Swarbrick, A.; Ganju, V.; Clark, S. J.; Pidsley, R.; Stirzaker, C.
Clinical Epigenetics 13 (1) :226, 2021 10.1186/s13148-021-01210-6
Calling differentially methylated regions from whole genome bisulphite sequencing with DMRcate
Peters, T. J.; Buckley, M. J.; Chen, Y.; Smyth, G. K.; Goodnow, C. C.; Clark, S. J.
NUCLEIC ACIDS RESEARCH 49 (19) :e109, 2021 10.1093/nar/gkab637
Mapping genomic and epigenomic evolution in cancer ecosystems
Ushijima, T.; Clark, S. J.; Tan, P.
SCIENCE 373 (6562) :1474-1479, 2021 10.1126/science.abh1645
DNA methylation is required to maintain both DNA replication timing precision and 3D genome organization integrity
Du, Q.; Smith, G. C.; Luu, P. L.; Ferguson, J. M.; Armstrong, N. J.; Caldon, C. E.; Campbell, E. M.; Nair, S. S.; Zotenko, E.; Gould, C. M.; Buckley, M.; Chia, K. M.; Portman, N.; Lim, E.; Kaczorowski, D.; Chan, C. L.; Barton, K.; Deveson, I. W.; Smith, M. A.; Powell, J. E.; Skvortsova, K.; Stirzaker, C.; Achinger-Kawecka, J.; Clark, S. J.
Cell Reports 36 (12) :109722, 2021 10.1016/j.celrep.2021.109722
BRG1 knockdown inhibits proliferation through multiple cellular pathways in prostate cancer
Giles, K. A.; Gould, C. M.; Achinger-Kawecka, J.; Page, S. G.; Kafer, G. R.; Rogers, S.; Luu, P. L.; Cesare, A. J.; Clark, S. J.; Taberlay, P. C.
Clinical Epigenetics 13 (1) :37, 2021 10.1186/s13148-021-01023-7
MethPanel: a parallel pipeline and interactive analysis tool for multiplex bisulphite PCR sequencing to assess DNA methylation biomarker panels for disease detection
Luu, P. L.; Ong, P. T.; Loc, T. T. H.; Lam, D.; Pidsley, R.; Stirzaker, C.; Clark, S. J.
Bioinformatics :btaa1060., 2020 10.1093/bioinformatics/btaa1060
Widespread Aberrant Alternative Splicing despite Molecular Remission in Chronic Myeloid Leukaemia Patients
Schmitz, U.; Shah, J. S.; Dhungel, B. P.; Monteuuis, G.; Luu, P. L.; Petrova, V.; Metierre, C.; Nair, S. S.; Bailey, C. G.; Saunders, V. A.; Turhan, A. G.; White, D. L.; Branford, S.; Clark, S. J.; Hughes, T. P.; Wong, J. J.; Rasko, J. E. J.
Cancers 12 (12) :3738, 2020 10.3390/cancers12123738
Advances in Prognostic Methylation Biomarkers for Prostate Cancer
Lam, D.; Clark, S.; Stirzaker, C.; Pidsley, R.
Cancers 12 (10) :2993, 2020 10.3390/cancers12102993
Transient exposure to miR-203 enhances the differentiation capacity of established pluripotent stem cells
Salazar-Roa, M.; Trakala, M.; Alvarez-Fernandez, M.; Valdes-Mora, F.; Zhong, C.; Munoz, J.; Yu, Y.; Peters, T. J.; Grana-Castro, O.; Serrano, R.; Zapatero-Solana, E.; Abad, M.; Bueno, M. J.; Gomez de Cedron, M.; Fernandez-Piqueras, J.; Serrano, M.; Blasco, M. A.; Wang, D. Z.; Clark, S. J.; Izpisua-Belmonte, J. C.; Ortega, S.; Malumbres, M.
EMBO JOURNAL 39 (16) :e104324, 2020 10.15252/embj.2019104324
OpenAccess publication Macrophage development and activation involve coordinated intron retention in key inflammatory regulators
Green, I. D.; Pinello, N.; Song, R.; Lee, Q.; Halstead, J. M.; Kwok, C. T.; Wong, A. C. H.; Nair, S. S.; Clark, S. J.; Roediger, B.; Schmitz, U.; Larance, M.; Hayashi, R.; Rasko, J. E. J.; Wong, J. J.
NUCLEIC ACIDS RESEARCH 48 (12) :6513-6529, 2020 10.1093/nar/gkaa435
OpenAccess publication Comprehensive evaluation of targeted multiplex bisulphite PCR sequencing for validation of DNA methylation biomarker panels
Lam, D.; Luu, P. L.; Song, J. Z.; Qu, W.; Risbridger, G. P.; Lawrence, M. G.; Lu, J.; Trau, M.; Korbie, D.; Clark, S. J.; Pidsley, R.; Stirzaker, C.
Clinical Epigenetics 12 (1) :90, 2020 10.1186/s13148-020-00880-y
Multiple links between 5-methylcytosine content of mRNA and translation
Schumann, U.; Zhang, H. N.; Sibbritt, T.; Pan, A.; Horvath, A.; Gross, S.; Clark, S. J.; Yang, L.; Preiss, T.
BMC Biology 18 (1) :40, 2020 10.1186/s12915-020-00769-5
OpenAccess publication Alterations in the methylome of the stromal tumour microenvironment signal the presence and severity of prostate cancer
Lawrence, M. G.; Pidsley, R.; Niranjan, B.; Papargiris, M.; Pereira, B. A.; Richards, M.; Teng, L.; Norden, S.; Ryan, A.; Frydenberg, M.; Stirzaker, C.; Taylor, R. A.; Risbridger, G. P.; Clark, S. J.
Clinical Epigenetics 12 (1) :48, 2020 10.1186/s13148-020-00836-2
OpenAccess publication Epigenetic reprogramming at estrogen-receptor binding sites alters 3D chromatin landscape in endocrine-resistant breast cancer
Achinger-Kawecka, J.; Valdes-Mora, F.; Luu, P. L.; Giles, K. A.; Caldon, C. E.; Qu, W.; Nair, S.; Soto, S.; Locke, W. J.; Yeo-Teh, N. S.; Gould, C. M.; Du, Q.; Smith, G. C.; Ramos, I. R.; Fernandez, K. F.; Hoon, D. S.; Gee, J. M. W.; Stirzaker, C.; Clark, S. J.
Nature Communications 11 (1) :320, 2020 10.1038/s41467-019-14098-x
OpenAccess publication Constitutively bound CTCF sites maintain 3D chromatin architecture and long-range epigenetically regulated domains
Khoury, A.; Achinger-Kawecka, J.; Bert, S. A.; Smith, G. C.; French, H. J.; Luu, P. L.; Peters, T. J.; Du, Q.; Parry, A. J.; Valdes-Mora, F.; Taberlay, P. C.; Stirzaker, C.; Statham, A. L.; Clark, S. J.
Nature Communications 11 (1) :54, 2020 10.1038/s41467-019-13753-7