Publications

52 items matching your search terms.

DNA methylation profiles unique to Kalahari KhoeSan individuals

Goncearenco, A.; LaBarre, B. A.; Petrykowska, H. M.; Jaratlerdsiri, W.; Bornman, M. S. R.; Turner, S. D.; Hayes, V. M.; Elnitski, L.

Epigenetics :1-17, 2021 10.1080/15592294.2020.1809852

Detection of somatic structural variants from short-read next-generation sequencing data

Gong, T.; Hayes, V. M.; Chan, E. K. F.

BRIEFINGS IN BIOINFORMATICS 2021 10.1093/bib/bbaa056

Shiny-SoSV: A web-based performance calculator for somatic structural variant detection

Gong, T.; Hayes, V. M.; Chan, E. K. F.

PLoS One 15 (8) :e0238108, 2020 10.1371/journal.pone.0238108

Prostate cancer cell-intrinsic interferon signaling regulates dormancy and metastatic outgrowth in bone

Owen, K. L.; Gearing, L. J.; Zanker, D. J.; Brockwell, N. K.; Khoo, W. H.; Roden, D. L.; Cmero, M.; Mangiola, S.; Hong, M. K.; Spurling, A. J.; McDonald, M.; Chan, C. L.; Pasam, A.; Lyons, R. J.; Duivenvoorden, H. M.; Ryan, A.; Butler, L. M.; Mariadason, J. M.; Giang Phan, T.; Hayes, V. M.; Sandhu, S.; Swarbrick, A.; Corcoran, N. M.; Hertzog, P. J.; Croucher, P. I.; Hovens, C.; Parker, B. S.

EMBO REPORTS 21 (6) :e50162, 2020 10.15252/embr.202050162

The Impact of Whole Genome Data on Therapeutic Decision-Making in Metastatic Prostate Cancer: A Retrospective Analysis

Crumbaker, M.; Chan, E. K. F.; Gong, T.; Corcoran, N.; Jaratlerdsiri, W.; Lyons, R. J.; Haynes, A. M.; Kulidjian, A. A.; Kalsbeek, A. M. F.; Petersen, D. C.; Stricker, P. D.; Jamieson, C. A. M.; Croucher, P. I.; Hovens, C. M.; Joshua, A. M.; Hayes, V. M.

Cancers 12 (5) :1178, 2020 10.3390/cancers12051178

MethylToSNP: identifying SNPs in Illumina DNA methylation array data

LaBarre, B. A.; Goncearenco, A.; Petrykowska, H. M.; Jaratlerdsiri, W.; Bornman, M. S. R.; Hayes, V. M.; Elnitski, L.

Epigenetics & Chromatin 12 (1) :79, 2019 10.1186/s13072-019-0321-6

Human origins in a southern African palaeo-wetland and first migrations

Chan, E. K. F.; Timmermann, A.; Baldi, B. F.; Moore, A. E.; Lyons, R. J.; Lee, S. S.; Kalsbeek, A. M. F.; Petersen, D. C.; Rautenbach, H.; Fortsch, H. E. A.; Bornman, M. S. R.; Hayes, V. M.

NATURE 575 (7781) :185-189, 2019 10.1038/s41586-019-1714-1

Metagenomic analysis reveals a rich bacterial content in high-risk prostate tumors from African men

Feng, Y.; Jaratlerdsiri, W.; Patrick, S. M.; Lyons, R. J.; Haynes, A. M.; Collins, C. C.; Stricker, P. D.; Bornman, M. S. R.; Hayes, V. M.

PROSTATE 79 (15) :1731-1738, 2019 10.1002/pros.23897

African KhoeSan ancestry linked to high-risk prostate cancer

Petersen, D. C.; Jaratlerdsiri, W.; van Wyk, A.; Chan, E. K. F.; Fernandez, P.; Lyons, R. J.; Mutambirw, S. B. A.; van der Merwe, A.; Venter, P. A.; Bates, W.; Bornman, M. S. R.; Hayes, V. M.

BMC Medical Genomics 12 (1) :82, 2019 10.1186/s12920-019-0537-0

TMPRSS2-ERG fusions linked to prostate cancer racial health disparities: A focus on Africa

Blackburn, J.; Vecchiarelli, S.; Heyer, E. E.; Patrick, S. M.; Lyons, R. J.; Jaratlerdsiri, W.; van Zyl, S.; Bornman, M. S. R.; Mercer, T. R.; Hayes, V. M.

PROSTATE 79 (10) :1191-1196, 2019 10.1002/pros.23823

Diagnosis of fusion genes using targeted RNA sequencing

Heyer, E. E.; Deveson, I. W.; Wooi, D.; Selinger, C. I.; Lyons, R. J.; Hayes, V. M.; O'Toole, S. A.; Ballinger, M. L.; Gill, D.; Thomas, D. M.; Mercer, T. R.; Blackburn, J.

Nature Communications 10 (1) :1388, 2019 10.1038/s41467-019-09374-9

Metagenomic and metatranscriptomic analysis of human prostate microbiota from patients with prostate cancer

Feng, Y.; Ramnarine, V. R.; Bell, R.; Volik, S.; Davicioni, E.; Hayes, V. M.; Ren, S.; Collins, C. C.

BMC Genomics 20 (1) :146, 2019 10.1186/s12864-019-5457-z

Whole Genome Sequencing Reveals Elevated Tumor Mutational Burden and Initiating Driver Mutations in African Men with Treatment-Naive, High-Risk Prostate Cancer

Jaratlerdsiri, W.; Chan, E. K. F.; Gong, T.; Petersen, D. C.; Kalsbeek, A. M. F.; Venter, P. A.; Stricker, P. D.; Bornman, M. R.; Hayes, V. M.

CANCER RESEARCH 78 :6736-6746, 2018 10.1158/0008-5472.CAN-18-0254

Prostate Cancer in Southern Africa: Does Africa Hold Untapped Potential to Add Value to the Current Understanding of a Common Disease?

Hayes, V. M.; Bornman, M. S. R.

Journal of Global Oncology (4) :1-7, 2018 10.1200/JGO.2016.008862

Optical mapping reveals a higher level of genomic architecture of chained fusions in cancer

Chan, E. K. F.; Cameron, D. L.; Petersen, D. C.; Lyons, R. J.; Baldi, B. F.; Papenfuss, A. T.; Thomas, D. M.; Hayes, V. M.

GENOME RESEARCH 28 (5) :726-738, 2018 10.1101/gr.227975.117

Guidelines for whole genome bisulphite sequencing of intact and FFPET DNA on the Illumina HiSeq X Ten

Nair, S. S.; Luu, P. L.; Qu, W.; Maddugoda, M.; Huschtscha, L.; Reddel, R.; Chenevix-Trench, G.; Toso, M.; Kench, J. G.; Horvath, L. G.; Hayes, V. M.; Stricker, P. D.; Hughes, T. P.; White, D. L.; Rasko, J. E. J.; Wong, J. J.; Clark, S. J.

Epigenetics & Chromatin 11 (1) :24, 2018 10.1186/s13072-018-0194-0