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23 items matching your search terms.
Use of synthetic DNA spike-in controls (sequins) for human genome sequencing
Blackburn, J.; Wong, T.; Madala, B. S.; Barker, C.; Hardwick, S. A.; Reis, A. L. M.; Deveson, I. W.; Mercer, T. R.
Nature Protocols 14 (7) :2119-2151, 2019 10.1038/s41596-019-0175-1
TMPRSS2-ERG fusions linked to prostate cancer racial health disparities: A focus on Africa
Blackburn, J.; Vecchiarelli, S.; Heyer, E. E.; Patrick, S. M.; Lyons, R. J.; Jaratlerdsiri, W.; van Zyl, S.; Bornman, M. S. R.; Mercer, T. R.; Hayes, V. M.
PROSTATE 79 (10) :1191-1196, 2019 10.1002/pros.23823
Diagnosis of fusion genes using targeted RNA sequencing
Heyer, E. E.; Deveson, I. W.; Wooi, D.; Selinger, C. I.; Lyons, R. J.; Hayes, V. M.; O'Toole, S. A.; Ballinger, M. L.; Gill, D.; Thomas, D. M.; Mercer, T. R.; Blackburn, J.
Nature Communications 10 (1) :1388, 2019 10.1038/s41467-019-09374-9
Chiral DNA sequences as commutable controls for clinical genomics
Deveson, I. W.; Madala, B. S.; Blackburn, J.; Barker, C.; Wong, T.; Barton, K. M.; Smith, M. A.; Watkins, D. N.; Mercer, T. R.
Nature Communications 10 (1) :1342, 2019 10.1038/s41467-019-09272-0
Synthetic microbe communities provide internal reference standards for metagenome sequencing and analysis
Hardwick, S. A.; Chen, W. Y.; Wong, T.; Kanakamedala, B. S.; Deveson, I. W.; Ongley, S. E.; Santini, N. S.; Marcellin, E.; Smith, M. A.; Nielsen, L. K.; Lovelock, C. E.; Neilan, B. A.; Mercer, T. R.
Nature Communications 9 (1) :3096, 2018 10.1038/s41467-018-05555-0
Machine learning annotation of human branchpoints
Signal, B.; Gloss, B. S.; Dinger, M. E.; Mercer, T. R.
Bioinformatics 34 (6) :920-927, 2018 10.1093/bioinformatics/btx688
OpenAccess publication Universal Alternative Splicing of Noncoding Exons
Deveson, I. W.; Brunck, M. E.; Blackburn, J.; Tseng, E.; Hon, T.; Clark, T. A.; Clark, M. B.; Crawford, J.; Dinger, M. E.; Nielsen, L. K.; Mattick, J. S.; Mercer, T. R.
Cell Systems 6 (2) :p245-255, 2018 10.1016/j.cels.2017.12.005
OpenAccess publication Intergenic disease-associated regions are abundant in novel transcripts
Bartonicek, N.; Clark, M. B.; Quek, X. C.; Torpy, J. R.; Pritchard, A. L.; Maag, J. L. V.; Gloss, B. S.; Crawford, J.; Taft, R. J.; Hayward, N. K.; Montgomery, G. W.; Mattick, J. S.; Mercer, T. R.; Dinger, M. E.
GENOME BIOLOGY 18 (1) :241, 2017 10.1186/s13059-017-1363-3
Reference standards for next-generation sequencing
Hardwick, S. A.; Deveson, I. W.; Mercer, T. R.
NATURE REVIEWS GENETICS 18 (8) :473-484, 2017 10.1038/nrg.2017.44
Phosphoproteomic profiling reveals ALK and MET as novel actionable targets across synovial sarcoma subtypes
Fleuren, E. D. G.; Vlenterie, M.; van der Graaf, W.; Hillebrandt-Roeffen, M. H. S.; Blackburn, J.; Ma, X.; Chan, H.; Magias, M. C.; van Erp, A.; van Houdt, L.; Cebeci, S.; van de Ven, A.; Flucke, U. E.; Heyer, E. E.; Thomas, D. M.; Lord, C. J.; Marini, K. D.; Vaghjiani, V.; Mercer, T.; Cain, J. E.; Wu, J.; Versleijen-Jonkers, Y. M. H.; Daly, R. J.
CANCER RESEARCH 77 (16) :4279-4292, 2017 10.1158/0008-5472.CAN-16-2550
Long Noncoding RNAs CUPID1 and CUPID2 Mediate Breast Cancer Risk at 11q13 by Modulating the Response to DNA Damage
Betts, J. A.; Moradi Marjaneh, M.; Al-Ejeh, F.; Lim, Y. C.; Shi, W.; Sivakumaran, H.; Tropee, R.; Patch, A. M.; Clark, M. B.; Bartonicek, N.; Wiegmans, A. P.; Hillman, K. M.; Kaufmann, S.; Bain, A. L.; Gloss, B. S.; Crawford, J.; Kazakoff, S.; Wani, S.; Wen, S. W.; Day, B.; Moller, A.; Cloonan, N.; Pearson, J.; Brown, M. A.; Mercer, T. R.; Waddell, N.; Khanna, K. K.; Dray, E.; Dinger, M. E.; Edwards, S. L.; French, J. D.
American Journal Of Human Genetics 101 (2) :255-266, 2017 10.1016/j.ajhg.2017.07.007
OpenAccess publication The Dimensions, Dynamics, and Relevance of the Mammalian Noncoding Transcriptome
Deveson, I. W.; Hardwick, S. A.; Mercer, T. R.; Mattick, J. S.
TRENDS IN GENETICS 33 (7) :464-478, 2017 10.1016/j.tig.2017.04.004
ANAQUIN: a software toolkit for the analysis of spike-in controls for next generation sequencing
Wong, T.; Deveson, I. W.; Hardwick, S. A.; Mercer, T. R.
Bioinformatics 33 (11) :1723-1724, 2017 10.1093/bioinformatics/btx038
Reference standards for next-generation sequencing.
Hardwick, S.A.; Deveson, I.W.; Mercer, T.R.
NATURE REVIEWS GENETICS 2017
OpenAccess publication Improved definition of the mouse transcriptome via targeted RNA sequencing
Bussotti, G.; Leonardi, T.; Clark, M. B.; Mercer, T. R.; Crawford, J.; Malquori, L.; Notredame, C.; Dinger, M. E.; Mattick, J. S.; Enright, A. J.;
GENOME RESEARCH 26 (5) :705-16, 2016