20 items matching your search terms.
-
SARS-CoV-2 structural coverage map reveals viral protein assembly, mimicry, and hijacking mechanisms
- O'Donoghue, S. I.; Schafferhans, A.; Sikta, N.; Stolte, C.; Kaur, S.; Ho, B. K.; Anderson, S.; Procter, J. B.; Dallago, C.; Bordin, N.; Adcock, M.; Rost, B.
-
Molecular Systems Biology
17
(9)
:e10079,
2021
10.15252/msb.202010079
-
PredictProtein - Predicting Protein Structure and Function for 29 Years
- Bernhofer, M.; Dallago, C.; Karl, T.; Satagopam, V.; Heinzinger, M.; Littmann, M.; Olenyi, T.; Qiu, J.; Schutze, K.; Yachdav, G.; Ashkenazy, H.; Ben-Tal, N.; Bromberg, Y.; Goldberg, T.; Kajan, L.; O'Donoghue, S.; Sander, C.; Schafferhans, A.; Schlessinger, A.; Vriend, G.; Mirdita, M.; Gawron, P.; Gu, W.; Jarosz, Y.; Trefois, C.; Steinegger, M.; Schneider, R.; Rost, B.
-
NUCLEIC ACIDS RESEARCH
49
(W1)
:W535-W540,
2021
10.1093/nar/gkab354
-
Single-cell transcriptomics reveals involution mimicry during the specification of the basal breast cancer subtype
- Valdes-Mora, F.; Salomon, R.; Gloss, B. S.; Law, A. M. K.; Venhuizen, J.; Castillo, L.; Murphy, K. J.; Magenau, A.; Papanicolaou, M.; Rodriguez de la Fuente, L.; Roden, D. L.; Colino-Sanguino, Y.; Kikhtyak, Z.; Farbehi, N.; Conway, J. R. W.; Sikta, N.; Oakes, S. R.; Cox, T. R.; O'Donoghue, S. I.; Timpson, P.; Ormandy, C. J.; Gallego-Ortega, D.
-
Cell Reports
35
(2)
:108945,
2021
10.1016/j.celrep.2021.108945
-
Molecular Graphics: Bridging Structural Biologists and Computer Scientists
- Martinez, X.; Krone, M.; Alharbi, N.; Rose, A. S.; Laramee, R. S.; O'Donoghue, S.; Baaden, M.; Chavent, M.
-
STRUCTURE
27
(11)
:1617-1623,
2019
10.1016/j.str.2019.09.001
-
SnapShot: S-Phase Entry and Exit
- Burgess, A.; Vuong, J.; Marzec, K. A.; Nicolai de Lichtenberg, U.; O'Donoghue, S. I.; Jensen, L. J.
-
CELL
179
(3)
:802-802 e1,
2019
10.1016/j.cell.2019.09.031
-
A benchmark dataset for analyzing and visualizing the dynamic epiproteome
- Kaur, S.; Baldi, B.; Vuong, J.; O'Donoghue, S. I.
-
Data in Brief
25
:104000,
2019
10.1016/j.dib.2019.104000
-
Visualization and Analysis of Epiproteome Dynamics
- Kaur, S.; Baldi, B.; Vuong, J.; O'Donoghue, S. I.
-
JOURNAL OF MOLECULAR BIOLOGY
431
(8)
:1519-1539,
2019
10.1016/j.jmb.2019.01.044
-
Dark Proteins Important for Cellular Function
- Schafferhans, A.; O'Donoghue, S. I.; Heinzinger, M.; Rost, B.
-
PROTEOMICS
:e1800227,
2018
10.1002/pmic.201800227
-
The Dark Proteome Database
- Perdigao, N.; Rosa, A. C.; O'Donoghue, S. I.
-
BioData Mining
10
:24,
2017
10.1186/s13040-017-0144-6
-
SnapShot: Phosphoregulation of Mitosis
- Burgess, A.; Vuong, J.; Rogers, S.; Malumbres, M.; O'Donoghue, S. I.
-
CELL
169
(7)
:1358-1358.e1,
2017
10.1016/j.cell.2017.06.003
-
Monogenic and polygenic determinants of sarcoma risk: an international genetic study
- Ballinger, M. L.; Goode, D. L.; Ray-Coquard, I.; James, P. A.; Mitchell, G.; Niedermayr, E.; Puri, A.; Schiffman, J. D.; Dite, G. S.; Cipponi, A.; Maki, R. G.; Brohl, A. S.; Myklebost, O.; Stratford, E. W.; Lorenz, S.; Ahn, S. M.; Ahn, J. H.; Kim, J. E.; Shanley, S.; Beshay, V.; Randall, R. L.; Judson, I.; Seddon, B.; Campbell, I. G.; Young, M. A.; Sarin, R.; Blay, J. Y.; O'Donoghue, S. I.; Thomas, D. M.; International Sarcoma Kindred, Study;
-
LANCET ONCOLOGY
17
(9)
:1261-71,
2016
-
Three-dimensional disorganization of the cancer genome occurs coincident with long-range genetic and epigenetic alterations
- Taberlay, P. C.
; Achinger-Kawecka, J.
; Lun, A. T.
; Buske, F. A.
; Sabir, K.
; Gould, C. M.
; Zotenko, E.
; Bert, S. A.
; Giles, K. A.
; Bauer, D. C.
; Smyth, G. K.
; Stirzaker, C.
; O'Donoghue, S. I.
; Clark, S. J.;
-
GENOME RESEARCH
26
(6)
:719-31,
2016
-
Unexpected features of the ‘dark’ proteome
- Perdigao, N.; Heinrich, J.; Stolte, C.; Sabir, K.S.; Buckley, M.J.; Tabor, B; Signal, B; Gloss, B.S.; Hammang, C.J.; Rost, B.; Schafferhans, A.; O'Donoghue, S.I.
-
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
112
(52)
:15898-903,
2015
-
Aquaria: Simplifying discovery and insight from protein structures
- O'Donoghue, S. I.; Sabir, K. S.; Kalemanov, M.; Stolte, C.; Wellmann, B.; Ho, V.; Roos, M.; Perdigao, N.; Buske, F. A.; Heinrich, J.; Rost, B.; Schafferhans, A.
-
NATURE METHODS
12
(2)
:98-99,
2015
-
How to learn about gene function: text-mining or ontologies?
- Soldatos, T. G.; Perdigao, N.; Brown, N. P.; Sabir, K. S.; O'Donoghue, S. I.
-
METHODS
74
:3-15,
2015
-
Unexpected features of the dark proteome
- Perdigao, N.
; Heinrich, J.
; Stolte, C.
; Sabir, K. S.
; Buckley, M. J.
; Tabor, B.
; Signal, B.
; Gloss, B. S.
; Hammang, C. J.
; Rost, B.
; Schafferhans, A.
; O'Donoghue, S. I.;
-
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
112
(52)
:15898-903,
2015