Garvan Institute of Medical Research

18 items matching your search terms.

MethPanel: a parallel pipeline and interactive analysis tool for multiplex bisulphite PCR sequencing to assess DNA methylation biomarker panels for disease detection: Luu, P. L.; Ong, P. T.; Loc, T. T. H.; Lam, D.; Pidsley, R.; Stirzaker, C.; Clark, S. J.; Bioinformatics :btaa1060., 2020 10.1093/bioinformatics/btaa1060

Advances in Prognostic Methylation Biomarkers for Prostate Cancer: Lam, D.; Clark, S.; Stirzaker, C.; Pidsley, R.; Cancers 12 (10) :2993, 2020 10.3390/cancers12102993

Comprehensive evaluation of targeted multiplex bisulphite PCR sequencing for validation of DNA methylation biomarker panels: Lam, D.; Luu, P. L.; Song, J. Z.; Qu, W.; Risbridger, G. P.; Lawrence, M. G.; Lu, J.; Trau, M.; Korbie, D.; Clark, S. J.; Pidsley, R.; Stirzaker, C.; Clinical Epigenetics 12 (1) :90, 2020 10.1186/s13148-020-00880-y

Alterations in the methylome of the stromal tumour microenvironment signal the presence and severity of prostate cancer: Lawrence, M. G.; Pidsley, R.; Niranjan, B.; Papargiris, M.; Pereira, B. A.; Richards, M.; Teng, L.; Norden, S.; Ryan, A.; Frydenberg, M.; Stirzaker, C.; Taylor, R. A.; Risbridger, G. P.; Clark, S. J.; Clinical Epigenetics 12 (1) :48, 2020 10.1186/s13148-020-00836-2

Cancer Methylation Biomarkers in circulating cell-free DNA.: Pidsley R, Stirzaker C; Clinical Epigenetics :217-245, 2019 10.1007/978-981-13-8958-0_10

Evaluation of cross-platform and interlaboratory concordance via consensus modelling of genomic measurements: Peters, T. J.; French, H. J.; Bradford, S. T.; Pidsley, R.; Stirzaker, C.; Varinli, H.; Nair, S.; Qu, W.; Song, J.; Giles, K. A.; Statham, A. L.; Speirs, H.; Speed, T. P.; Clark, S. J.; Bioinformatics 35 (4) :560-570, 2019 10.1093/bioinformatics/bty675

DNA Hypermethylation Encroachment at CpG Island Borders in Cancer Is Predisposed by H3K4 Monomethylation Patterns: Skvortsova, K.; Masle-Farquhar, E.; Luu, P. L.; Song, J. Z.; Qu, W.; Zotenko, E.; Gould, C. M.; Du, Q.; Peters, T. J.; Colino-Sanguino, Y.; Pidsley, R.; Nair, S. S.; Khoury, A.; Smith, G. C.; Miosge, L. A.; Reed, J. H.; Kench, J. G.; Rubin, M. A.; Horvath, L.; Bogdanovic, O.; Lim, S. M.; Polo, J. M.; Goodnow, C. C.; Stirzaker, C.; Clark, S. J.; CANCER CELL 35 (2) :297-314 e8, 2019 10.1016/j.ccell.2019.01.004

Enduring epigenetic landmarks define the cancer microenvironment: Pidsley, R.; Lawrence, M. G.; Zotenko, E.; Niranjan, B.; Statham, A.; Song, J.; Chabanon, R. M.; Qu, W.; Wang, H.; Richards, M.; Nair, S. S.; Armstrong, N. J.; Nim, H. T.; Papargiris, M.; Balanathan, P.; French, H.; Peters, T.; Norden, S.; Ryan, A.; Pedersen, J.; Kench, J.; Daly, R. J.; Horvath, L. G.; Stricker, P.; Frydenberg, M.; Taylor, R. A.; Stirzaker, C.; Risbridger, G. P.; Clark, S. J.; GENOME RESEARCH 28 (5) :625-638, 2018 10.1101/gr.229070.117

Methyl-CpG-binding protein MBD2 plays a key role in maintenance and spread of DNA methylation at CpG islands and shores in cancer: Stirzaker, C.; Song, J. Z.; Ng, W.; Du, Q.; Armstrong, N. J.; Locke, W. J.; Statham, A. L.; French, H.; Pidsley, R.; Valdes-Mora, F.; Zotenko, E.; Clark, S. J.; ONCOGENE 36 (10) :1328-1338, 2017 10.1038/onc.2016.297

Schizophrenia-associated methylomic variation: molecular signatures of disease and polygenic risk burden across multiple brain regions: Viana, J.; Hannon, E.; Dempster, E.; Pidsley, R.; Macdonald, R.; Knox, O.; Spiers, H.; Troakes, C.; Al-Saraj, S.; Turecki, G.; Schalkwyk, L. C.; Mill, J.; HUMAN MOLECULAR GENETICS 26 (1) :210-225, 2017 10.1093/hmg/ddw373

Critical evaluation of the Illumina MethylationEPIC BeadChip microarray for whole-genome DNA methylation profiling: Pidsley, R. ; Zotenko, E. ; Peters, T. J. ; Lawrence, M. G. ; Risbridger, G. P. ; Molloy, P. ; Van Djik, S. ; Muhlhausler, B. ; Stirzaker, C. ; Clark, S. J.;; GENOME BIOL 17 (1) :208, 2016

Genome-scale methylation assessment did not identify prognostic biomarkers in oral tongue carcinomas: Lim, A. M. ; Wong, N. C. ; Pidsley, R. ; Zotenko, E. ; Corry, J. ; Dobrovic, A. ; Clark, S. J. ; Rischin, D. ; Solomon, B.;; Clinical Epigenetics 8 :74, 2016

Methylation QTLs in the developing brain and their enrichment in schizophrenia risk loci: Hannon, E. ; Spiers, H. ; Viana, J. ; Pidsley, R. ; Burrage, J. ; Murphy, T. M. ; Troakes, C. ; Turecki, G. ; O'Donovan, M. C. ; Schalkwyk, L. C. ; Bray, N. J. ; Mill, J.;; NATURE NEUROSCIENCE 19 (1) :48-54, 2016

DNA methylation profiles in preeclampsia and healthy control placentas: Yeung, K. R. ; Chiu, C. L. ; Pidsley, R. ; Makris, A. ; Hennessy, A. ; Lind, J. M.;; AMERICAN JOURNAL OF PHYSIOLOGY-HEART AND CIRCULATORY PHYSIOLOGY 310 (10) :H1295-303, 2016

Methylomic analysis of monozygotic twins discordant for childhood psychotic symptoms: Fisher, H. L. ; Murphy, T. M. ; Arseneault, L. ; Caspi, A. ; Moffitt, T. E. ; Viana, J. ; Hannon, E. ; Pidsley, R. ; Burrage, J. ; Dempster, E. L. ; Wong, C. C. ; Pariante, C. M. ; Mill, J.;; Epigenetics 10 :1014-1023, 2015

DNA methylation of oestrogen-regulated enhancers defines endocrine sensitivity in breast cancer: Stone, A.; Zotenko, E.; Locke, W. J; Korbie, D.; Millar, E. K.; Pidsley, R.; Stirzaker, C.; Graham, P.; Trau, M.; Musgrove, E. A.; Nicholson, R. I.; Gee, J. M.; Clark, S. J.:; Nature Communications 6 :7758, 2015