Publications Search

Search for publications by author
Search for publications by abstract keyword(s)

Search results

50 items matching your search terms.
Identification of DNA methylation biomarkers with potential to predict response to neoadjuvant chemotherapy in triple-negative breast cancer
Meyer, B.; Clifton, S.; Locke, W.; Luu, P. L.; Du, Q.; Lam, D.; Armstrong, N. J.; Kumar, B.; Deng, N.; Harvey, K.; Swarbrick, A.; Ganju, V.; Clark, S. J.; Pidsley, R.; Stirzaker, C.
Clinical Epigenetics 13 (1) :226, 2021 10.1186/s13148-021-01210-6
DNA methylation is required to maintain both DNA replication timing precision and 3D genome organization integrity
Du, Q.; Smith, G. C.; Luu, P. L.; Ferguson, J. M.; Armstrong, N. J.; Caldon, C. E.; Campbell, E. M.; Nair, S. S.; Zotenko, E.; Gould, C. M.; Buckley, M.; Chia, K. M.; Portman, N.; Lim, E.; Kaczorowski, D.; Chan, C. L.; Barton, K.; Deveson, I. W.; Smith, M. A.; Powell, J. E.; Skvortsova, K.; Stirzaker, C.; Achinger-Kawecka, J.; Clark, S. J.
Cell Reports 36 (12) :109722, 2021 10.1016/j.celrep.2021.109722
Ubiquitin chromatin remodelling after DNA damage is associated with the expression of key cancer genes and pathways
Cole, A. J.; Dickson, K. A.; Liddle, C.; Stirzaker, C.; Shah, J. S.; Clifton-Bligh, R.; Marsh, D. J.
CELLULAR AND MOLECULAR LIFE SCIENCES 78 (3) :1011-1027, 2021 10.1007/s00018-020-03552-5
MethPanel: a parallel pipeline and interactive analysis tool for multiplex bisulphite PCR sequencing to assess DNA methylation biomarker panels for disease detection
Luu, P. L.; Ong, P. T.; Loc, T. T. H.; Lam, D.; Pidsley, R.; Stirzaker, C.; Clark, S. J.
Bioinformatics :btaa1060., 2020 10.1093/bioinformatics/btaa1060
Advances in Prognostic Methylation Biomarkers for Prostate Cancer
Lam, D.; Clark, S.; Stirzaker, C.; Pidsley, R.
Cancers 12 (10) :2993, 2020 10.3390/cancers12102993
OpenAccess publication Comprehensive evaluation of targeted multiplex bisulphite PCR sequencing for validation of DNA methylation biomarker panels
Lam, D.; Luu, P. L.; Song, J. Z.; Qu, W.; Risbridger, G. P.; Lawrence, M. G.; Lu, J.; Trau, M.; Korbie, D.; Clark, S. J.; Pidsley, R.; Stirzaker, C.
Clinical Epigenetics 12 (1) :90, 2020 10.1186/s13148-020-00880-y
OpenAccess publication Alterations in the methylome of the stromal tumour microenvironment signal the presence and severity of prostate cancer
Lawrence, M. G.; Pidsley, R.; Niranjan, B.; Papargiris, M.; Pereira, B. A.; Richards, M.; Teng, L.; Norden, S.; Ryan, A.; Frydenberg, M.; Stirzaker, C.; Taylor, R. A.; Risbridger, G. P.; Clark, S. J.
Clinical Epigenetics 12 (1) :48, 2020 10.1186/s13148-020-00836-2
OpenAccess publication Epigenetic reprogramming at estrogen-receptor binding sites alters 3D chromatin landscape in endocrine-resistant breast cancer
Achinger-Kawecka, J.; Valdes-Mora, F.; Luu, P. L.; Giles, K. A.; Caldon, C. E.; Qu, W.; Nair, S.; Soto, S.; Locke, W. J.; Yeo-Teh, N. S.; Gould, C. M.; Du, Q.; Smith, G. C.; Ramos, I. R.; Fernandez, K. F.; Hoon, D. S.; Gee, J. M. W.; Stirzaker, C.; Clark, S. J.
Nature Communications 11 (1) :320, 2020 10.1038/s41467-019-14098-x
OpenAccess publication Constitutively bound CTCF sites maintain 3D chromatin architecture and long-range epigenetically regulated domains
Khoury, A.; Achinger-Kawecka, J.; Bert, S. A.; Smith, G. C.; French, H. J.; Luu, P. L.; Peters, T. J.; Du, Q.; Parry, A. J.; Valdes-Mora, F.; Taberlay, P. C.; Stirzaker, C.; Statham, A. L.; Clark, S. J.
Nature Communications 11 (1) :54, 2020 10.1038/s41467-019-13753-7
The DNA methylation landscape in cancer
Skvortsova, K.; Stirzaker, C.; Taberlay, P.
Essays in Biochemistry 63 (6) :797-811, 2019 10.1042/EBC20190037
Cancer Methylation Biomarkers in circulating cell-free DNA.
Pidsley R, Stirzaker C
Clinical Epigenetics :217-245, 2019 10.1007/978-981-13-8958-0_10
OpenAccess publication Methylome and transcriptome maps of human visceral and subcutaneous adipocytes reveal key epigenetic differences at developmental genes
Bradford, S. T.; Nair, S. S.; Statham, A. L.; van Dijk, S. J.; Peters, T. J.; Anwar, F.; French, H. J.; von Martels, J. Z. H.; Sutcliffe, B.; Maddugoda, M. P.; Peranec, M.; Varinli, H.; Arnoldy, R.; Buckley, M.; Ross, J. P.; Zotenko, E.; Song, J. Z.; Stirzaker, C.; Bauer, D. C.; Qu, W.; Swarbrick, M. M.; Lutgers, H. L.; Lord, R. V.; Samaras, K.; Molloy, P. L.; Clark, S. J.
Scientific Reports 9 (1) :9511, 2019 10.1038/s41598-019-45777-w
OpenAccess publication Evaluation of cross-platform and interlaboratory concordance via consensus modelling of genomic measurements
Peters, T. J.; French, H. J.; Bradford, S. T.; Pidsley, R.; Stirzaker, C.; Varinli, H.; Nair, S.; Qu, W.; Song, J.; Giles, K. A.; Statham, A. L.; Speirs, H.; Speed, T. P.; Clark, S. J.
Bioinformatics 35 (4) :560-570, 2019 10.1093/bioinformatics/bty675
Integrated epigenomic analysis stratifies chromatin remodellers into distinct functional groups
Giles, K. A.; Gould, C. M.; Du, Q.; Skvortsova, K.; Song, J. Z.; Maddugoda, M. P.; Achinger-Kawecka, J.; Stirzaker, C.; Clark, S. J.; Taberlay, P. C.
Epigenetics & Chromatin 12 (1) :12, 2019 10.1186/s13072-019-0258-9
OpenAccess publication DNA Hypermethylation Encroachment at CpG Island Borders in Cancer Is Predisposed by H3K4 Monomethylation Patterns
Skvortsova, K.; Masle-Farquhar, E.; Luu, P. L.; Song, J. Z.; Qu, W.; Zotenko, E.; Gould, C. M.; Du, Q.; Peters, T. J.; Colino-Sanguino, Y.; Pidsley, R.; Nair, S. S.; Khoury, A.; Smith, G. C.; Miosge, L. A.; Reed, J. H.; Kench, J. G.; Rubin, M. A.; Horvath, L.; Bogdanovic, O.; Lim, S. M.; Polo, J. M.; Goodnow, C. C.; Stirzaker, C.; Clark, S. J.
CANCER CELL 35 (2) :297-314 e8, 2019 10.1016/j.ccell.2019.01.004
OpenAccess publication Replication timing and epigenome remodelling are associated with the nature of chromosomal rearrangements in cancer
Du, Q.; Bert, S. A.; Armstrong, N. J.; Caldon, C. E.; Song, J. Z.; Nair, S. S.; Gould, C. M.; Luu, P. L.; Peters, T.; Khoury, A.; Qu, W.; Zotenko, E.; Stirzaker, C.; Clark, S. J.
Nature Communications 10 (1) :416, 2019 10.1038/s41467-019-08302-1