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118 items matching your search terms.
OpenAccess publication Monozygotic twins and triplets discordant for amyotrophic lateral sclerosis display differential methylation and gene expression
Tarr, I. S.; McCann, E. P.; Benyamin, B.; Peters, T. J.; Twine, N. A.; Zhang, K. Y.; Zhao, Q.; Zhang, Z. H.; Rowe, D. B.; Nicholson, G. A.; Bauer, D.; Clark, S. J.; Blair, I. P.; Williams, K. L.
Scientific Reports 9 (1) :8254, 2019 10.1038/s41598-019-44765-4
MicroRNA-196a is regulated by ER and is a prognostic biomarker in ER+ breast cancer
Milevskiy, M. J. G.; Gujral, U.; Del Lama Marques, C.; Stone, A.; Northwood, K.; Burke, L. J.; Gee, J. M. W.; Nephew, K.; Clark, S.; Brown, M. A.
British Journal of Cancer 120 (6) :621-632, 2019 10.1038/s41416-019-0395-8
OpenAccess publication Evaluation of cross-platform and interlaboratory concordance via consensus modelling of genomic measurements
Peters, T. J.; French, H. J.; Bradford, S. T.; Pidsley, R.; Stirzaker, C.; Varinli, H.; Nair, S.; Qu, W.; Song, J.; Giles, K. A.; Statham, A. L.; Speirs, H.; Speed, T. P.; Clark, S. J.
Bioinformatics 35 (4) :560-570, 2019 10.1093/bioinformatics/bty675
Integrated epigenomic analysis stratifies chromatin remodellers into distinct functional groups
Giles, K. A.; Gould, C. M.; Du, Q.; Skvortsova, K.; Song, J. Z.; Maddugoda, M. P.; Achinger-Kawecka, J.; Stirzaker, C.; Clark, S. J.; Taberlay, P. C.
Epigenetics & Chromatin 12 (1) :12, 2019 10.1186/s13072-019-0258-9
OpenAccess publication DNA Hypermethylation Encroachment at CpG Island Borders in Cancer Is Predisposed by H3K4 Monomethylation Patterns
Skvortsova, K.; Masle-Farquhar, E.; Luu, P. L.; Song, J. Z.; Qu, W.; Zotenko, E.; Gould, C. M.; Du, Q.; Peters, T. J.; Colino-Sanguino, Y.; Pidsley, R.; Nair, S. S.; Khoury, A.; Smith, G. C.; Miosge, L. A.; Reed, J. H.; Kench, J. G.; Rubin, M. A.; Horvath, L.; Bogdanovic, O.; Lim, S. M.; Polo, J. M.; Goodnow, C. C.; Stirzaker, C.; Clark, S. J.
CANCER CELL 35 (2) :297-314 e8, 2019 10.1016/j.ccell.2019.01.004
OpenAccess publication Replication timing and epigenome remodelling are associated with the nature of chromosomal rearrangements in cancer
Du, Q.; Bert, S. A.; Armstrong, N. J.; Caldon, C. E.; Song, J. Z.; Nair, S. S.; Gould, C. M.; Luu, P. L.; Peters, T.; Khoury, A.; Qu, W.; Zotenko, E.; Stirzaker, C.; Clark, S. J.
Nature Communications 10 (1) :416, 2019 10.1038/s41467-019-08302-1
OpenAccess publication Mother-child transmission of epigenetic information by tunable polymorphic imprinting
Carpenter, B. L.; Zhou, W.; Madaj, Z.; DeWitt, A. K.; Ross, J. P.; Gronbaek, K.; Liang, G.; Clark, S. J.; Molloy, P. L.; Jones, P. A.
OpenAccess publication Epigenomics of mammary gland development
Holliday, H.; Baker, L. A.; Junankar, S. R.; Clark, S. J.; Swarbrick, A.
BREAST CANCER RESEARCH 20 (1) :100, 2018 10.1186/s13058-018-1031-x
Guidelines for whole genome bisulphite sequencing of intact and FFPET DNA on the Illumina HiSeq X Ten
Nair, S. S.; Luu, P. L.; Qu, W.; Maddugoda, M.; Huschtscha, L.; Reddel, R.; Chenevix-Trench, G.; Toso, M.; Kench, J. G.; Horvath, L. G.; Hayes, V. M.; Stricker, P. D.; Hughes, T. P.; White, D. L.; Rasko, J. E. J.; Wong, J. J.; Clark, S. J.
Epigenetics & Chromatin 11 (1) :24, 2018 10.1186/s13072-018-0194-0
OpenAccess publication Enduring epigenetic landmarks define the cancer microenvironment
Pidsley, R.; Lawrence, M. G.; Zotenko, E.; Niranjan, B.; Statham, A.; Song, J.; Chabanon, R. M.; Qu, W.; Wang, H.; Richards, M.; Nair, S. S.; Armstrong, N. J.; Nim, H. T.; Papargiris, M.; Balanathan, P.; French, H.; Peters, T.; Norden, S.; Ryan, A.; Pedersen, J.; Kench, J.; Daly, R. J.; Horvath, L. G.; Stricker, P.; Frydenberg, M.; Taylor, R. A.; Stirzaker, C.; Risbridger, G. P.; Clark, S. J.
GENOME RESEARCH 28 (5) :625-638, 2018 10.1101/gr.229070.117
Bisulphite Sequencing of Chromatin Immunoprecipitated DNA (BisChIP-seq)
Stirzaker, C.; Song, J. Z.; Statham, A. L.; Clark, S. J.
Methods in Molecular Biology 1708 :285-302, 2018 10.1007/978-1-4939-7481-8_15
Transient and Permanent Reconfiguration of Chromatin and Transcription Factor Occupancy Drive Reprogramming
Knaupp, A. S.; Buckberry, S.; Pflueger, J.; Lim, S. M.; Ford, E.; Larcombe, M. R.; Rossello, F. J.; de Mendoza, A.; Alaei, S.; Firas, J.; Holmes, M. L.; Nair, S. S.; Clark, S. J.; Nefzger, C. M.; Lister, R.; Polo, J. M.
Cell Stem Cell 21 (6) :834-845 e6, 2017 10.1016/j.stem.2017.11.007
OpenAccess publication Acetylated histone variant H2A.Z is involved in the activation of neo-enhancers in prostate cancer
Valdes-Mora, F.; Gould, C. M.; Colino-Sanguino, Y.; Qu, W.; Song, J. Z.; Taylor, K. M.; Buske, F. A.; Statham, A. L.; Nair, S. S.; Armstrong, N. J.; Kench, J. G.; Lee, K. M. L.; Horvath, L. G.; Qiu, M.; Ilinykh, A.; Yeo-Teh, N. S.; Gallego-Ortega, D.; Stirzaker, C.; Clark, S. J.
Nature Communications 8 (1) :1346, 2017 10.1038/s41467-017-01393-8
Smoke-Induced Changes to the Epigenome Provide Fertile Ground for Oncogenic Mutation
Clark, S. J.; Molloy, P. L.
CANCER CELL 32 (3) :278-280, 2017 10.1016/j.ccell.2017.08.016
Comprehensive evaluation of genome-wide 5-hydroxymethylcytosine profiling approaches in human DNA
Skvortsova, K.; Zotenko, E.; Luu, P. L.; Gould, C. M.; Nair, S. S.; Clark, S. J.; Stirzaker, C.
Epigenetics & Chromatin 10 :16, 2017 10.1186/s13072-017-0123-7
Methyl-CpG-binding protein MBD2 plays a key role in maintenance and spread of DNA methylation at CpG islands and shores in cancer
Stirzaker, C.; Song, J. Z.; Ng, W.; Du, Q.; Armstrong, N. J.; Locke, W. J.; Statham, A. L.; French, H.; Pidsley, R.; Valdes-Mora, F.; Zotenko, E.; Clark, S. J.
ONCOGENE 36 (10) :1328-1338, 2017 10.1038/onc.2016.297