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118 items matching your search terms.
Multiplex bisulfite PCR resequencing of clinical FFPE DNA
Korbie, D. ; Lin, E. ; Wall, D. ; Nair, S. S. ; Stirzaker, C. ; Clark, S. J. ; Trau, M.;
Clinical Epigenetics 7 (1) :28, 2015
OpenAccess publication Genome-wide nucleosome occupancy and DNA methylation profiling of four human cell lines
Statham, A. L. ; Taberlay, P. C. ; Kelly, T. K. ; Jones, P. A. ; Clark, S. J.;
Genom Data 3 :94-6, 2015
OpenAccess publication MicroRNA profiling of the pubertal mouse mammary gland identifies miR-184 as a candidate breast tumour suppressor gene
Phua, Y. W.; Nguyen, A.; Roden, D. L.; Elsworth, B.; Deng, N.; Nikolic, I.; Yang, J.; McFarland, A.; Russell, R.; Kaplan, W.; Cowley, M. J.; Nair, R.; Zotenko, E.; O'Toole, S.; Tan, S. X.; James, D. E.; Clark, S. J.; Kouros-Mehr, H.; Swarbrick, A.;
BREAST CANCER RES 17 :83, 2015
COBRA-Seq: Sensitive and Quantitative Methylome Profiling
Varinli, H. ; Statham, A. L. ; Clark, S. J. ; Molloy, P. L. ; Ross, J. P.;
Genes 6 (4) :1140-63, 2015
OpenAccess publication Reconfiguration of nucleosome depleted regions at distal regulatory elements accompanies DNA methylation of enhancers and insulators in cancer
Taberlay, P. C.; Statham, A. L.; Kelly, T. K.; Clark, S. J.; Jones, P. A.;
GENOME RESEARCH 24 :1421-32, 2014
OpenAccess publication BayMeth: Improved DNA methylation estimation for affinity capture sequencing data using a flexible Bayesian approach
Riebler, A.; Song, J.Z.; Statham, A.L.; Stirzaker, C.; Menigatti, M.; Mahmud, N.; Mein, C.A.; Marra, G.; Clark, S.J.; Robinson, M.D.
GENOME BIOL 15 (2) :R35, 2014
OpenAccess publication Profiling the tyrosine phosphoproteome of different mouse mammary tumour models reveals distinct, model-specific signaling networks and conserved oncogenic pathways
Ali, N. A. ; Wu, J. ; Hochgrafe, F. ; Chan, H. ; Nair, R. ; Ye, S. ; Zhang, L. ; Lyons, R. J. ; Pinese, M. ; Lee, H. ; Armstrong, N. ; Ormandy, C. J. ; Clark, S. J. ; Swarbrick, A. ; Daly, R. J.;
BREAST CANCER RES 16 (5) :437, 2014
OpenAccess publication ZNF300P1 Encodes a lincRNA that regulates cell polarity and is epigenetically silenced in type II epithelial ovarian cancer.
Gloss, B.; Moran-Jones, K.; Lin, V.; Gonzalez, M.; Scurry, J.; Hacker, N. F.; Sutherland, R. L.; Clark, S. J.; Samimi, G.
Molecular Cancer 13 (1) :3, 2014 10.1186/1476-4598-13-3
OpenAccess publication Circulating microRNAs are associated with docetaxel chemotherapy outcome in castration-resistant prostate cancer
Lin, H.-M.; Castillo, L.; Mahon K.L.; Chiam, K; Lee, B.; Nguyen, Q.; Boyer, M.J.; Stockler, M.R; Pavlakis, N.; Marx, G.; Mallesara, G.; Gurney, H.; Clark, S.J.; Swarbrick, A.; Daly, R.J.; Horvath, L.G.
British Journal of Cancer 2014
NGSANE: A Lightweight Production Informatics Framework for High Throughput Data Analysis
Buske, F.A.; French, H.J.; Smith, M.A.; Clark, S.J.; Bauer, D.C.;
BIOINFORMATICS :2, 2014
OpenAccess publication NGSANE: a lightweight production informatics framework for high-throughput data analysis
Buske, F. A. ; French, H. J. ; Smith, M. A. ; Clark, S. J. ; Bauer, D. C.;
Bioinformatics 30 (10) :1471-2, 2014
OpenAccess publication Methylated Glutathione S-transferase 1 (mGSTP1) is a potential plasma free DNA epigenetic marker of prognosis and response to chemotherapy in castrate-resistant prostate cancer
Mahon, K. L. ; Qu, W. ; Devaney, J. ; Paul, C. ; Castillo, L. ; Wykes, R. J. ; Chatfield, M. D. ; Boyer, M. J. ; Stockler, M. R. ; Marx, G. ; Gurney, H. ; Mallesara, G. ; Molloy, P. L. ; Horvath, L. G. ; Clark, S. J. ; consortium, P. RIMe;
British Journal of Cancer 111 (9) :1802-9, 2014
OpenAccess publication Methylation-capture and Next-Generation Sequencing of free circulating DNA from human plasma
Warton, K. ; Lin, V. ; Navin, T. ; Armstrong, N. J. ; Kaplan, W. ; Ying, K. ; Gloss, B. ; Mangs, H. ; Nair, S. S. ; Hacker, N. F. ; Sutherland, R. L. ; Clark, S. J. ; Samimi, G.;
BMC Genomics 15 :476, 2014
OpenAccess publication Mining cancer methylomes: prospects and challenges
Stirzaker, C. ; Taberlay, P. C. ; Statham, A. L. ; Clark, S. J.;
TRENDS IN GENETICS 30 (2) :75-84, 2014
Chromatin remodeler mutations in human cancers: epigenetic implications
Skulte, K. A. ; Phan, L. ; Clark, S. J. ; Taberlay, P. C.;
Epigenomics 6 (4) :397-414, 2014
OpenAccess publication Exploring and exploiting the aberrant DNA methylation profile of endocrine-resistant breast cancer
Stone, A. ; Valdes-Mora, F. ; Clark, S. J.;
Epigenomics 5 (6) :595-8, 2013