Dr Fabian Buske
Fabian completed his Bachelor and Master of Science at Freie Universität Berlin, Germany, before starting his PhD on nucleic acid triple helices at the Institute for Molecular Bioscience in Brisbane, Australia, graduating in 2013.
He then joined the Cancer Epigenetics lab at the Garvan Institute and accepted the challenge of integrating the wide array of epigenetic data sets as well as to extend our predominately one-dimensional view of genomic data to the third dimension to unravel the cellular mechanisms that contribute to cancer.
Fabian specialises in machine learning and graph-based data analysis of large sequence, epigenomic, transcriptomic and medical data sets and is tapping into state-of-the-art Big Data technology to advance our understanding of cancer biology.
In the NewsA 3D view of the cancer genome - Jun 06, 2016
Garvan / CSIRO team wins first prize in the 2015 NSW iAwards - Jul 10, 2015
2007 - MSc (Major: Bioinformatics), Freie Universität Berlin - Germany
2005 - BSc (Major: Bioinformatics), Freie Universität Berlin - Germany
Fabian A. Buske, Hugh J. French, Martin A. Smith, Susan J. Clark and Denis C. Bauer. NGSANE: A Lightweight Production Informatics Framework for High Throughput Data Analysis. Bioinformatics, 2014: 10.1093/bioinformatics/btu036.
Fabian A. Buske, Denis C. Bauer, John S. Mattick, Timothy L. Bailey. Triplex-Inspector: an analysis tool for triplex-mediated targeting of genomic loci. Bioinformatics, 2013: doi: 10.1093/bioinformatics/btt315
Fabian A. Buske, Denis C. Bauer, John S. Mattick, Timothy L. Bailey. Triplex-Inspector: an analysis tool for triplex-mediated targeting of genomic loci. Genome Research, 2012: doi:10.1101/gr.130237.111
Fabian A. Buske, John S. Mattick, Timothy L. Bailey, Potential in vivo roles of nucleic acid triple-helices. RNA biology, 2011, doi: 10.4161/rna.8.3.14999
Fabian A. Buske, Mikael Bodén, Denis C Bauer, Timothy L. Bailey, Assigning roles to DNA regulatory motifs using comparative genomics. Bioinformatics, 2010, doi:10.1093/bioinformatics/btq049
Timothy L Bailey, Mikael Boden, Fabian A Buske, Martin Frith, Charles E Grant, Luca Clementi, Jingyuan Ren, Wilfred W Li, William S Noble, MEME SUITE: tools for motif discovery and searching. Nucl. Acids Res, 2009, doi: 10.1093/nar/gkp335