Epitranscriptomics and RNA Dynamics Group

Publications

The RNA modification landscape in human disease
Jonkhout, N.; Tran, J.; Smith, M. A.; Schonrock, N.; Mattick, J. S.; Novoa, E. M.
RNA 23(12):1754-1769, 2017
Integrative analyses of the RNA modification machinery reveal tissue- and cancer-specific signatures
Begik, O.; Lucas, M. C.; Liu, H.; Ramirez, J. M.; Mattick, J. S.; Novoa, E. M.
GENOME BIOLOGY 21(1):97, 2020
Mitochondrial Protein Synthesis and mtDNA Levels Coordinated through an Aminoacyl-tRNA Synthetase Subunit
Picchioni, D.; Antolin-Fontes, A.; Camacho, N.; Schmitz, C.; Pons-Pons, A.; Rodriguez-Escriba, M.; Machallekidou, A.; Guler, M. N.; Siatra, P.; Carretero-Junquera, M.; Serrano, A.; Hovde, S. L.; Knobel, P. A.; Novoa, E. M.; Sola-Vilarrubias, M.; Kaguni, L. S.; Stracker, T. H.; Ribas de Pouplana, L.
Cell Reports 27(1):40-47 e5, 2019
Elucidation of Codon Usage Signatures across the Domains of Life
Novoa, E. M.; Jungreis, I.; Jaillon, O.; Kellis, M.
MOLECULAR BIOLOGY AND EVOLUTION 36(10):2328-2339, 2019
Analyses of mRNA structure dynamics identify embryonic gene regulatory programs
Beaudoin, J. D.; Novoa, E. M.; Vejnar, C. E.; Yartseva, V.; Takacs, C. M.; Kellis, M.; Giraldez, A. J.
NAT STRUCT MOL BIOL 25(8):677-686, 2018
MasterOfPores: A Workflow for the Analysis of Oxford Nanopore Direct RNA Sequencing Datasets
Cozzuto, L.; Liu, H.; Pryszcz, L. P.; Pulido, T. H.; Delgado-Tejedor, A.; Ponomarenko, J.; Novoa, E. M.
Frontiers in Genetics 11:211, 2020
Quantitative profiling of pseudouridylation dynamics in native RNAs with nanopore sequencing
Begik, O.; Lucas, M. C.; Pryszcz, L. P.; Ramirez, J. M.; Medina, R.; Milenkovic, I.; Cruciani, S.; Liu, H.; Vieira, H. G. S.; Sas-Chen, A.; Mattick, J. S.; Schwartz, S.; Novoa, E. M.
NATURE BIOTECHNOLOGY 2021
Accurate detection of m(6)A RNA modifications in native RNA sequences
Liu, H.; Begik, O.; Lucas, M. C.; Ramirez, J. M.; Mason, C. E.; Wiener, D.; Schwartz, S.; Mattick, J. S.; Smith, M. A.; Novoa, E. M.
Nature Communications 10(1):4079, 2019