Intravital Microscopy Lab

Publications

The learning curve, interobserver, and intraobserver agreement of endoscopic confocal laser endomicroscopy in the assessment of mucosal barrier defects
Chang, J.; Ip, M.; Yang, M.; Wong, B.; Power, T.; Lin, L.; Xuan, W.; Giang Phan, T.; Leong, RW.
GASTROINTESTINAL ENDOSCOPY 83(4):785-791 e1, 2016
Autoinflammation Masquerading as Autoimmunity in an Adult with Heterozygous p.E250K PSTPIP1 Mutation
Dai, P.; Furlong, T.; Gracie, G.; Huang, M. L.; Yang, T.; Wu, K. H. C.; Danta, M.; Wong, M.; Williams, A.; March, L.; Hetherington, M.; Heyworth-Smith, D.; Phan, T. G.
JOURNAL OF CLINICAL IMMUNOLOGY 39(5):519-522, 2019
Practical intravital two-photon microscopy for immunological research: faster, brighter, deeper
Phan, T.G.; Bullen, A.
IMMUNOLOGY AND CELL BIOLOGY 88(4):438-44, 2010
Checkpoint inhibitors for cancer immunotherapy. Multiple checkpoints on the long road towards cancer immunotherapy
Phan, T. G.
; Long, G. V.
; Scolyer, R. A.;
IMMUNOLOGY AND CELL BIOLOGY 93(4):323-5, 2015
Evaluation of affinity-based genome-wide DNA methylation data: Effects of CpG density, amplification bias, and copy number variation
Robinson, M.D.; Stirzaker, C.; Statham, A.L.; Coolen, M.W.; Song, J.; Nair, S.; Strbenac, D.; Speed, T.P.; Clark, S.J.:
GENOME RESEARCH 20(12):1719-29, 2010
Subcapsular Sinus Macrophages: The Seat of Innate and Adaptive Memory in Murine Lymph Nodes
Moran, I.; Grootveld, AK.; Nguyen, A.; Phan, TG.
TRENDS IN IMMUNOLOGY 1526(40):35-48, 2019
B cell-intrinsic requirement for STK4 in humoral immunity in mice and human subjects
Moran, I.; Avery, D. T.; Payne, K.; Lenthall, H.; Davies, E. G.; Burns, S.; Ip, W.; Oleastro, M. M.; Reisli, I.; Guner, S.; Keles, S.; Notarangelo, L.; Deenick, E. K.; Goodnow, C. C.; Zahra, D.; Brink, R.; Circa; Wong, M.; Tangye, S. G.; Ma, C. S.; Phan, T. G.
JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY 143(6):2302-2305, 2019
The microanatomy of B cell activation.
Phan, T.G, Gray E.E.; Cyster; J.G.:
CURRENT OPINION IN IMMUNOLOGY 21(3):258-65, 2009
Protocol matters: Which methylome are you actually studying?
Robinson, M.D.; Statham, A.L.; Speed, T.P.; Clark, S.J.
Epigenomics 2(4):587-598, 2010
Fabricating low cost and high performance elastomer lenses using hanging droplets
Lee, W. M.; Upadhya, A.; Reece, P. J.; Phan, T. G.
Biomedical Optics Express 5(5):1626-35, 2014
Micromanaging memory with immunoglobulin microclusters
Phan, T.G.; Brink, R.
IMMUNITY 32(6):732, 2010
IgM autoantibodies: Roquin and Bob1ng to a different tune
Phan, T.G.
IMMUNOLOGY AND CELL BIOLOGY 2014
Fate Mapping and Transcript Profiling of Germinal Center Cells by Two-Photon Photoconversion
Moran, I.; Phan, T.
Methods in Molecular Biology 1623:59-72, 2017
The geography of memory B cell reactivation in vaccine-induced immunity and in autoimmune disease relapses
Dhenni, R.; Phan, T. G.
IMMUNOLOGICAL REVIEWS 296(1):62-86, 2020
Clearing the complexity: immune complexes and their treatment in lupus nephritis
Toong, C.; Adelstein, S.; Phan, T. G.;
Int J Nephrol Renovasc Dis 4:17-28, 2011
Osteoclasts recycle via osteomorphs during RANKL-stimulated bone resorption
McDonald, M. M.; Khoo, W. H.; Ng, P. Y.; Xiao, Y.; Zamerli, J.; Thatcher, P.; Kyaw, W.; Pathmanandavel, K.; Grootveld, A. K.; Moran, I.; Butt, D.; Nguyen, A.; Corr, A.; Warren, S.; Biro, M.; Butterfield, N. C.; Guilfoyle, S. E.; Komla-Ebri, D.; Dack, M. R. G.; Dewhurst, H. F.; Logan, J. G.; Li, Y.; Mohanty, S. T.; Byrne, N.; Terry, R. L.; Simic, M. K.; Chai, R.; Quinn, J. M. W.; Youlten, S. E.; Pettitt, J. A.; Abi-Hanna, D.; Jain, R.; Weninger, W.; Lundberg, M.; Sun, S.; Ebetino, F. H.; Timpson, P.; Lee, W. M.; Baldock, P. A.; Rogers, M. J.; Brink, R.; Williams, G. R.; Bassett, J. H. D.; Kemp, J. P.; Pavlos, N. J.; Croucher, P. I.; Phan, T. G.
CELL 184(5):1330-1347 e13, 2021
Single Cell RNA Sequencing of Rare Immune Cell Populations
Nguyen, A.; Khoo, W. H.; Moran, I.; Croucher, P. I.; Phan, T. G.
Frontiers in Immunology 9:1553, 2018
Impaired Intestinal Permeability Contributes to Ongoing Bowel Symptoms in Patients With Inflammatory Bowel Disease and Mucosal Healing.
Chang, J.; Leong, RW.; Wasinger, V.; IP, M.; Yang, M.; Giang Phan, T.
GASTROENTEROLOGY 153(3):723-731, 2017
Memory B cells are reactivated in subcapsular proliferative foci of lymph nodes
Moran, I.; Nguyen, A.; Khoo, W. H.; Butt, D.; Bourne, K.; Young, C.; Hermes, J. R.; Biro, M.; Gracie, G.; Ma, C. S.; Munier, C. M. L.; Luciani, F.; Zaunders, J.; Parker, A.; Kelleher, A. D.; Tangye, S. G.; Croucher, P. I.; Brink, R.; Read, M. N.; Phan, T. G.
Nature Communications 9(1):3372, 2018
B cell-intrinsic requirement for STK4 in humoral immunity in mice and humans
Moran, I.; Avery, D. T.; Payne, K.; Lenthall, H.; Davies, E. G.; Burns, S.; Ip, W.; Oleastro, M. M.; Reisli, I.; Guner, S.; Keles, S.; Notarangelo, L.; Deenick, E. K.; Goodnow, C. C.; Zahra, D.; Brink, R.; Circa; Wong, M.; Tangye, S. G.; Ma, C. S.; Phan, T. G.
JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY 143(6):2302-2305, 2019
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
Robinson, M. D.; McCarthy, D. J.; Smyth, G. K.;
Bioinformatics 26(1):139-40, 2010
Multiple checkpoints on the long road towards cancer immunotherapy
Phan, T. G.
; Long, G. V.
; Scolyer, R. A.;
IMMUNOLOGY AND CELL BIOLOGY 93(4):323-5, 2015
Immune complex relay by subcapsular sinus macrophages and noncognate B cells drives antibody affinity maturation
Phan, T. G.; Green, J. A.; Gray, E. E.; Xu, Y.; Cyster, J. G.;
NATURE IMMUNOLOGY 10(7):786-793, 2009
Generation of memory B cells and their reactivation
Inoue, T.; Moran, I.; Shinnakasu, R.; Phan, T. G.; Kurosaki, T.
IMMUNOLOGICAL REVIEWS 283(1):138-149, 2018
Border patrol: SCS macrophages activate iNKT cells too
Phan, T.G.; Chtanova, T.
IMMUNOLOGY AND CELL BIOLOGY 88(6):619-21, 2010