KCCG Sequencing Laboratory
The KCCG Sequencing Laboratory offers research accredited, scalable sequencing and expert genomic analysis. We tailor sequencing and analysis solutions to suit your needs – from small research studies to large-scale populations and cohorts.
Our expert team have experience with a diverse range of projects, and can help design a custom service that matches your goals.
Contact us at kccgseq@garvan.org.au to find out how we can help with your project.
Our services
Nanopore sequencing
Features
Research accredited sequencing
All sequencing is performed in our ISO17025-accredited laboratory (with no clinical reporting).
Award-winning analytics
Our genome analytics pipeline was awarded the highest SNP precision in the precisionFDA Truth Challenge in 2016*
Collaborative, flexible service
Access our complete sequencing and analysis infrastructure, and work with our experts to build custom genomic analyses
*This award is not an endorsement by the U.S. FDA of our product and services.
How it works
Request quote
Accept quote
Complete online manifest
Prepare samples
Submit samples & documents
Sequencing
Bioinformatics
Data delivery
Applications
Our cohort sequencing and custom bioinformatics services can be applied to a diverse range of projects
Clinical trials
Get the most out of your clinical trial by genetically profiling your cohort
Life sciences
Academic, clinical and commercial research
Preventative health
Development of early detection or risk/susceptibility screens
Drug discovery
Drug target and biomarker discovery
Forensics / Forensic Pathology
Efficient and accurate detection of genetic factors that may contribute to unexplained death
Agrigenomics
De novo assembly, breeding line characterisation, crop or animal selection and improvement
These data are from the Coriell Cell Repository NA12878 reference cell line, which has been extensively analysed by the Genome in a Bottle Consortium. The sequencing libraries were generated with Illumina’s TruSeq Nano V2.5 kit using the Hamilton Microlab STAR robotics platform, achieving >400bp inserts. Each library was sequenced on a single lane of an Illumina HiSeq X patterned flow cell, achieving over 130Gb of yield, with > 83% of bases with quality > Q30 in just 2.8 days. The four data sets are of similar quality, and are provided to allow you to assess the reproducibility of the technology. Each data set substantially surpasses the minimum coverage and quality guaranteed by Illumina and is indicative of the potential for the Illumina HiSeq X sequencing system.
Each of the four datasets consists of raw paired-end data (fastq.gz files) and results obtained with the GATK DNAseq best practices pipeline run on each library independently with the recommended parameters for whole genome sequencing.
Download the data to your computer or server, using the links in these tables.
