KCCG Sequencing Laboratory

Delivering research sequencing and data analysis at scale.

KCCG Sequencing Laboratory

The KCCG Sequencing Laboratory offers clinically accredited, scalable sequencing and expert genomic analysis. We tailor sequencing and analysis solutions to suit your needs – from small research studies to large-scale populations and cohorts.

Our expert team have experience with a diverse range of projects, and can help design a custom service that matches your goals. 

Contact us at kccgseq@garvan.org.au to find out how we can help with your project.

 

Request a quote

Download our sample submission guidelines or access them online here

Our services

Whole genome sequencing

Whole Genome Sequencing

Whole exome sequencing

Whole Exome Sequencing

Features

Clinically accredited sequencing

All sequencing is performed in our ISO15189-accredited laboratory.

 

Award-winning analytics

Our genome analytics pipeline was awarded the highest SNP precision in the precisionFDA Truth Challenge in 2016*

 

Collaborative, flexible service

Access our complete sequencing and analysis infrastructure, and work with our experts to build custom genomic analyses

 *This award is not an endorsement by the U.S. FDA of our product and services.

How it works

Request quote

Accept quote

Complete online manifest

Prepare samples

Submit samples & documents

Sequencing

Bioinformatics

Data delivery

Applications

Our cohort sequencing and custom bioinformatics services can be applied to a diverse range of projects

Clinical trials

Get the most out of your clinical trial by genetically profiling your cohort

Life sciences

Academic, clinical and commercial research

Preventative health

Development of early detection or risk/susceptibility screens

Drug discovery

Drug target and biomarker discovery

Forensics / Forensic Pathology

Efficient and accurate detection of genetic factors that may contribute to unexplained death

Agrigenomics

De novo assembly, breeding line characterisation, crop or animal selection and improvement

These data are from the Coriell Cell Repository NA12878 reference cell line, which has been extensively analysed by the Genome in a Bottle Consortium. The sequencing libraries were generated with Illumina’s TruSeq Nano V2.5 kit using the Hamilton Microlab STAR robotics platform, achieving >400bp inserts. Each library was sequenced on a single lane of an Illumina HiSeq X patterned flow cell, achieving over 130Gb of yield, with > 83% of bases with quality > Q30 in just 2.8 days. The four data sets are of similar quality, and are provided to allow you to assess the reproducibility of the technology. Each data set substantially surpasses the minimum coverage and quality guaranteed by Illumina and is indicative of the potential for the Illumina HiSeq X sequencing system.

 

Each of the four datasets consists of raw paired-end data (fastq.gz files) and results obtained with the GATK DNAseq best practices pipeline run on each library independently with the recommended parameters for whole genome sequencing.

 

Download the data to your computer or server, using the links in these tables.