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Reference data tables

Human Sample Data

  Replicate 1 Replicate 2
FASTQ R1 NA12878_V2.5_Robot_1_R1.fastq.gz NA12878_V2.5_Robot_2_R1.fastq.gz
FASTQ R2 NA12878_V2.5_Robot_1_R2.fastq.gz NA12878_V2.5_Robot_2_R2.fastq.gz
BAM NA12878_V2.5_Robot_1.dedup.realigned.recalibrated.bam NA12878_V2.5_Robot_2.dedup.realigned.recalibrated.bam
BAI NA12878_V2.5_Robot_1.dedup.realigned.recalibrated.bam.bai NA12878_V2.5_Robot_2.dedup.realigned.recalibrated.bam.bai
VCF NA12878_V2.5_Robot_1.hc.vqsr.vep.vcf.gz NA12878_V2.5_Robot_2.hc.vqsr.vep.vcf.gz
TBI NA12878_V2.5_Robot_1.hc.vqsr.vep.vcf.gz.tbi NA12878_V2.5_Robot_2.hc.vqsr.vep.vcf.gz.tbi
  Replicate 3 Replicate 4
FASTQ R1 NA12878_V2.5_Robot_3_R1.fastq.gz NA12878_V2.5_Robot_4_R1.fastq.gz
FASTQ R2 NA12878_V2.5_Robot_3_R2.fastq.gz NA12878_V2.5_Robot_4_R2.fastq.gz
BAM NA12878_V2.5_Robot_3.dedup.realigned.recalibrated.bam NA12878_V2.5_Robot_4.dedup.realigned.recalibrated.bam
BAI NA12878_V2.5_Robot_3.dedup.realigned.recalibrated.bam.bai NA12878_V2.5_Robot_4.dedup.realigned.recalibrated.bam.bai
VCF NA12878_V2.5_Robot_3.hc.vqsr.vep.vcf.gz NA12878_V2.5_Robot_4.hc.vqsr.vep.vcf.gz
TBI NA12878_V2.5_Robot_3.hc.vqsr.vep.vcf.gz.tbi NA12878_V2.5_Robot_4.hc.vqsr.vep.vcf.gz.tbi
MD5sum NA12878_V2.5_Robot.md5sum

Key Metrics

Library NA12878_V2.5_Robot_1 NA12878_V2.5_Robot_2 NA12878_V2.5_Robot_3 NA12878_V2.5_Robot_4
Flowcell H7LH3CCXX H7KMTCCXX H7CYCCCXX H7CYCCCXX
Lane 5 6 1 2
Read length 151bp PE 151bp PE 151bp PE 151bp PE
Raw Read Pairs (PF) 439,013,514 510,726,469 464,350,208 479,861,658
Raw Yield (Gb) 131.704 153.218 139.305 143.958
% bases >=Q30 (R1/R2) 92.39/81.23 93.18/73.37 89.89/77.44 93.00/78.75
% bases >=Q30 (mean) 86.81 83.28 83.67 85.88
Alignment % 98.448 98.972 95.53 97.911
Duplication % 10.6 11.549 10.592 12.032
Coverage (mean) 34.8873 39.51173 35.69027 37.34294
Coverage (stdev) 10.52019 11.37284 10.24081 10.57043