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ANAQUIN: a software toolkit for the analysis of spike-in controls for next generation sequencing

Abstract

Summary: Spike-in controls are synthetic nucleic-acid sequences that are added to a user's sample and constitute internal standards for subsequent steps in the next generation sequencing workflow. Availability and Implementation: : The software is implemented in C ++/R and is freely available under BSD license. The source code is available from github.com/student-t/Anaquin , binaries and user manual from www.sequin.xyz/software and R package from bioconductor.org/packages/Anaquin. Contact: anaquin@garvan.org.au or t.mercer@garvan.org.au. Supplementary information: Supplementary data are available at Bioinformatics online.

Type Journal
ISBN 1367-4811 (Electronic) 1367-4803 (Linking)
Authors Wong, T.; Deveson, I. W.; Hardwick, S. A.; Mercer, T. R.
Responsible Garvan Author Dr Timothy Mercer
Publisher Name BIOINFORMATICS
Published Date 2017-06-30
Published Volume 33
Published Issue 11
Published Pages 1723-1724
Status Published in-print
DOI 10.1093/bioinformatics/btx038
URL link to publisher's version https://www.ncbi.nlm.nih.gov/pubmed/28130232