Selected Publications


O'Donoghue, S.I., et al., Visualization of Biomedical Data. Annual Review of Biomedical Data Science, 2018. 1(1): p. in press.

Netzel R., Vuong J., Engelke U., O’Donoghue S., et al (2017), Comparative eye-tracking evaluation of scatterplots and parallel coordinates, Visual Informatics, 1, 2: 118-131

Ballinger, M.L., et al., Novel monogenic and polygenic determinants of sarcoma risk: An international study of 1162 families. The Lancet Oncology, 2016. 17(9): p. 1261-1271.

Taberlay, P.C., et al., Three-dimensional disorganisation of the cancer genome occurs coincident with long range genetic and epigenetic alterations. Genome Research, 2016.

Stolte, C., et al., Integrated visual analysis of protein structures, sequences, and feature data. BMC Bioinformatics, 2015. 16(Suppl 11): p. S7.

Safarchi, Azadeh et al (2016), Genomic dissection of Australian Bortadella pertussis isolates from the 2008-2012 epidemic, Journal of Infection, 72, 4:468-477

Perdigão, N., et al., Unexpected features of the dark proteome. Proceedings of the National Academy of Sciences of the United States of America, 2015. 112(52): p. 15898–15903.

O'Donoghue, S.I., et al., Aquaria: Simplifying discovery and insight from protein structures. Nature Methods, 2015. 12: p. 98–99.

Ma, D.K.G., et al., SnapShot: Insulin/IGF1 signaling Cell, 2015. 161(4): p. 948.

Heinrich, J., S. Kaur, and S.I. O'Donoghue, Evaluating the effectiveness of color to convey uncertainty in macromolecular structures, in IEEE Symposium on Big Data Visual Analytics. 2015: Hobart, Australia. p. 41-48.

Soldatos, T.G., et al., How to learn about gene function: text-mining or ontologies? Methods, 2014. 74: p. 3-15.

K Sabir, C Stolte, B Tabor, SI O'Donoghue. The Molecular Control Toolkit: controlling 3D molecular graphics via gesture and voice. In Proceedings of the 2013 IEEE Symposium on Biological Data Visualization (BioVis), Atlanta, GA, USA.



More Garvan Publications