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Hiruna Samarakoon

Hiruna Samarakoon

Role: Genomic Software Developer
Lab/Group: Genomic Technologies Lab

Selected publications

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2025
Bioinformatics (Oxford, England)10.1093/bioinformatics/btaf111
Leveraging basecaller's move table to generate a lightweight k-mer model for nanopore sequencing analysis.
Hiruna Samarakoon, Yuk Kei Wan, Sri Parameswaran, Jonathan Göke, Hasindu Gamaarachchi, Ira W Deveson
2024
Bioinformatics (Oxford, England)10.1093/bioinformatics/btae501
Interactive visualization of nanopore sequencing signal data with Squigualiser.
Hiruna Samarakoon, Kisaru Liyanage, James M Ferguson, Sri Parameswaran, Hasindu Gamaarachchi, Ira W Deveson
2024
Genome Research10.1101/gr.278730.123
Simulation of nanopore sequencing signal data with tunable parameters.
Hasindu Gamaarachchi, James M Ferguson, Hiruna Samarakoon, Kisaru Liyanage, Ira W Deveson
2023
Scientific Reports10.1038/s41598-023-47354-8
Efficient end-to-end long-read sequence mapping using minimap2-fpga integrated with hardware accelerated chaining.
Kisaru Liyanage, Hiruna Samarakoon, Sri Parameswaran, Hasindu Gamaarachchi
2023
Bioinformatics (Oxford, England)10.1093/bioinformatics/btad352
Accelerated nanopore basecalling with SLOW5 data format.
Hiruna Samarakoon, James M Ferguson, Hasindu Gamaarachchi, Ira W Deveson

See all Garvan publications