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Hiruna Samarakoon

Hiruna Samarakoon

PhD Student: Genomic Technologies Lab

Selected Publications

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2023
Scientific reports10.1038/s41598-023-47354-8
Efficient end-to-end long-read sequence mapping using minimap2-fpga integrated with hardware accelerated chaining.
Kisaru Liyanage, Hiruna Samarakoon, Sri Parameswaran, Hasindu Gamaarachchi
2023
Bioinformatics (Oxford, England)10.1093/bioinformatics/btad352
Accelerated nanopore basecalling with SLOW5 data format.
Hiruna Samarakoon, James M Ferguson, Hasindu Gamaarachchi, Ira W Deveson
2023
Genome biology10.1186/s13059-023-02910-3
Flexible and efficient handling of nanopore sequencing signal data with slow5tools.
Hiruna Samarakoon, James M Ferguson, Sasha P Jenner, Timothy G Amos, Sri Parameswaran, Hasindu Gamaarachchi, Ira W Deveson
2022
Nature biotechnology10.1038/s41587-021-01147-4
Fast nanopore sequencing data analysis with SLOW5.
Hasindu Gamaarachchi, Hiruna Samarakoon, Sasha P Jenner, James M Ferguson, Timothy G Amos, Jillian M Hammond, Hassaan Saadat, Martin A Smith, Sri Parameswaran, Ira W Deveson
2020
Communications biology10.1038/s42003-020-01270-z
Genopo: a nanopore sequencing analysis toolkit for portable Android devices.
Hiruna Samarakoon, Sanoj Punchihewa, Anjana Senanayake, Jillian M Hammond, Igor Stevanovski, James M Ferguson, Roshan Ragel, Hasindu Gamaarachchi, Ira W Deveson

See all Garvan publications