- PUBLISHED 29 March 2025Bioinformatics (Oxford, England)
Leveraging basecaller's move table to generate a lightweight k-mer model for nanopore sequencing analysis
Authors:
Hiruna Samarakoon, Yuk Kei Wan, Sri Parameswaran, Jonathan Göke, Hasindu Gamaarachchi, Ira W Deveson
- PUBLISHED 6 January 2025GigaScience
The enduring advantages of the SLOW5 file format for raw nanopore sequencing data
Authors:
Hasindu Gamaarachchi, Sasha Jenner, Hiruna Samarakoon, James M Ferguson, Ira W Deveson
- PUBLISHED 2 August 2024Bioinformatics (Oxford, England)
Interactive visualization of nanopore sequencing signal data with Squigualiser
Authors:
Hiruna Samarakoon, Kisaru Liyanage, James M Ferguson, Sri Parameswaran, Hasindu Gamaarachchi, Ira W Deveson
- PUBLISHED 25 June 2024Genome Research
Simulation of nanopore sequencing signal data with tunable parameters
Authors:
Hasindu Gamaarachchi, James M Ferguson, Hiruna Samarakoon, Kisaru Liyanage, Ira W Deveson
- PUBLISHED 17 November 2023Scientific Reports
Efficient end-to-end long-read sequence mapping using minimap2-fpga integrated with hardware accelerated chaining
Authors:
Kisaru Liyanage, Hiruna Samarakoon, Sri Parameswaran, Hasindu Gamaarachchi
